Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
SYN_00357 | SYN_00358 | Predicted alternative thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. | Hypothetical cytosolic protein. | 0.565 |
SYN_00357 | SYN_00359 | Predicted alternative thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. | DNA polymerase V subunit; Represses a number of genes involved in the response to DNA damage (SOS response). | 0.583 |
SYN_00357 | SYN_00360 | Predicted alternative thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. | Hypothetical membrane protein. | 0.440 |
SYN_00358 | SYN_00357 | Hypothetical cytosolic protein. | Predicted alternative thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. | 0.565 |
SYN_00358 | SYN_00359 | Hypothetical cytosolic protein. | DNA polymerase V subunit; Represses a number of genes involved in the response to DNA damage (SOS response). | 0.773 |
SYN_00358 | SYN_00360 | Hypothetical cytosolic protein. | Hypothetical membrane protein. | 0.587 |
SYN_00359 | SYN_00357 | DNA polymerase V subunit; Represses a number of genes involved in the response to DNA damage (SOS response). | Predicted alternative thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. | 0.583 |
SYN_00359 | SYN_00358 | DNA polymerase V subunit; Represses a number of genes involved in the response to DNA damage (SOS response). | Hypothetical cytosolic protein. | 0.773 |
SYN_00359 | SYN_00360 | DNA polymerase V subunit; Represses a number of genes involved in the response to DNA damage (SOS response). | Hypothetical membrane protein. | 0.588 |
SYN_00360 | SYN_00357 | Hypothetical membrane protein. | Predicted alternative thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. | 0.440 |
SYN_00360 | SYN_00358 | Hypothetical membrane protein. | Hypothetical cytosolic protein. | 0.587 |
SYN_00360 | SYN_00359 | Hypothetical membrane protein. | DNA polymerase V subunit; Represses a number of genes involved in the response to DNA damage (SOS response). | 0.588 |