STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYN_00407Hypothetical membrane protein. (319 aa)    
Predicted Functional Partners:
SYN_01274
Cell division protein.
   
 
 0.746
SYN_01048
iron(III) dicitrate transport protein.
    
 
 0.739
SYN_01448
Thymidylate kinase.
    
 
 0.721
SYN_00408
Hypothetical cytosolic protein.
       0.571
SYN_00406
Hypothetical cytosolic protein.
       0.533
SYN_02053
Chromosome partitioning protein.
   
 
 0.506
SYN_00404
Hypothetical cytosolic protein.
       0.481
SYN_00405
Hypothetical cytosolic protein.
       0.481
SYN_02576
Signal transduction histidine kinase.
   
 
 0.478
SYN_00194
Periplasmic protease; Belongs to the peptidase S41A family.
  
   0.470
Your Current Organism:
Syntrophus aciditrophicus
NCBI taxonomy Id: 56780
Other names: S. aciditrophicus SB, Syntrophus aciditrophicus SB, Syntrophus aciditrophicus str. SB, Syntrophus aciditrophicus strain SB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.