Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
SYN_00778 | SYN_00779 | General secretion pathway protein A. | Tyrosine-protein kinase; Capsular polysaccharide biosynthesis. | 0.909 |
SYN_00778 | SYN_00780 | General secretion pathway protein A. | Chain length determinant protein, Wzz-like protein. | 0.907 |
SYN_00778 | SYN_00781 | General secretion pathway protein A. | Hypothetical exported protein. | 0.750 |
SYN_00778 | SYN_00782 | General secretion pathway protein A. | Periplasmic protein involved in polysaccharide export. | 0.774 |
SYN_00778 | SYN_01095 | General secretion pathway protein A. | TPR repeat-containing protein. | 0.594 |
SYN_00778 | SYN_01097 | General secretion pathway protein A. | Hypothetical membrane protein. | 0.761 |
SYN_00778 | SYN_01204 | General secretion pathway protein A. | Chain length determinant protein, Wzz-like protein. | 0.765 |
SYN_00778 | SYN_01205 | General secretion pathway protein A. | Periplasmic protein involved in polysaccharide export. | 0.687 |
SYN_00778 | SYN_03031 | General secretion pathway protein A. | Tyrosine-protein kinase; Capsular polysaccharide biosynthesis. | 0.661 |
SYN_00779 | SYN_00778 | Tyrosine-protein kinase; Capsular polysaccharide biosynthesis. | General secretion pathway protein A. | 0.909 |
SYN_00779 | SYN_00780 | Tyrosine-protein kinase; Capsular polysaccharide biosynthesis. | Chain length determinant protein, Wzz-like protein. | 0.945 |
SYN_00779 | SYN_00781 | Tyrosine-protein kinase; Capsular polysaccharide biosynthesis. | Hypothetical exported protein. | 0.795 |
SYN_00779 | SYN_00782 | Tyrosine-protein kinase; Capsular polysaccharide biosynthesis. | Periplasmic protein involved in polysaccharide export. | 0.898 |
SYN_00779 | SYN_01095 | Tyrosine-protein kinase; Capsular polysaccharide biosynthesis. | TPR repeat-containing protein. | 0.541 |
SYN_00779 | SYN_01097 | Tyrosine-protein kinase; Capsular polysaccharide biosynthesis. | Hypothetical membrane protein. | 0.773 |
SYN_00779 | SYN_01204 | Tyrosine-protein kinase; Capsular polysaccharide biosynthesis. | Chain length determinant protein, Wzz-like protein. | 0.837 |
SYN_00779 | SYN_01205 | Tyrosine-protein kinase; Capsular polysaccharide biosynthesis. | Periplasmic protein involved in polysaccharide export. | 0.851 |
SYN_00780 | SYN_00778 | Chain length determinant protein, Wzz-like protein. | General secretion pathway protein A. | 0.907 |
SYN_00780 | SYN_00779 | Chain length determinant protein, Wzz-like protein. | Tyrosine-protein kinase; Capsular polysaccharide biosynthesis. | 0.945 |
SYN_00780 | SYN_00781 | Chain length determinant protein, Wzz-like protein. | Hypothetical exported protein. | 0.908 |
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