STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYN_00940Peptidoglycan-specific endopeptidase, M23 family. (453 aa)    
Predicted Functional Partners:
SYN_00999
Lipoprotein.
 
   
 0.768
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
  
 0.612
SYN_00931
Integrin-like repeat protein.
 
     0.564
SYN_00939
GTP-binding protein TypA/BipA.
       0.563
SYN_00587
Hypothetical membrane protein.
  
     0.546
SYN_00555
Peptidyl-prolyl cis-trans isomerase.
  
   
 0.533
SYN_01408
Cell wall-associated hydrolase.
 
  
 0.493
SYN_01486
Cell wall-associated hydrolase.
 
  
 0.478
SYN_01527
Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.478
SYN_02791
Membrane-bound lytic murein transglycosylase D precursor.
 
  
 0.455
Your Current Organism:
Syntrophus aciditrophicus
NCBI taxonomy Id: 56780
Other names: S. aciditrophicus SB, Syntrophus aciditrophicus SB, Syntrophus aciditrophicus str. SB, Syntrophus aciditrophicus strain SB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.