STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYN_01269Zinc-binding dehydrogenase. (362 aa)    
Predicted Functional Partners:
SYN_02201
Pyruvate dehydrogenase (ferredoxin/flavodoxin-dependent).
  
  
 0.534
SYN_01655
6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase.
 
0.505
SYN_01270
Hypothetical membrane protein.
       0.469
SYN_03253
Hypothetical cytosolic protein.
       0.469
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
  
  
 0.454
SYN_01159
Alcohol dehydrogenase.
 
0.447
SYN_00565
2-amino-3-ketobutyrate coenzyme A ligase.
 
  
 0.432
SYN_02568
8-amino-7-oxononanoate synthase.
 
  
 0.432
SYN_01268
Hypothetical cytosolic protein.
       0.429
Your Current Organism:
Syntrophus aciditrophicus
NCBI taxonomy Id: 56780
Other names: S. aciditrophicus SB, Syntrophus aciditrophicus SB, Syntrophus aciditrophicus str. SB, Syntrophus aciditrophicus strain SB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.