STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYN_01549General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (554 aa)    
Predicted Functional Partners:
SYN_01550
General secretion pathway protein F.
 
 0.968
SYN_01284
General secretion pathway protein F.
 
 0.947
SYN_00457
General secretion pathway protein F.
 
 0.939
SYN_01548
General secretion pathway protein D.
 
  
 0.936
SYN_00458
General secretion pathway protein E.
  
  
 
0.911
SYN_01551
General secretion pathway protein G.
 
 
 0.852
SYN_00575
Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.827
SYN_00459
General secretion pathway protein G.
 
 
 0.721
SYN_01772
Type IV secretion; Outer membrane porin; Belongs to the bacterial secretin family.
 
 
 
 0.695
SYN_00448
General secretion pathway protein D.
 
  
 0.690
Your Current Organism:
Syntrophus aciditrophicus
NCBI taxonomy Id: 56780
Other names: S. aciditrophicus SB, Syntrophus aciditrophicus SB, Syntrophus aciditrophicus str. SB, Syntrophus aciditrophicus strain SB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.