Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SYN_01774Pili assembly protein. (236 aa)    
Predicted Functional Partners:
SYN_01775
Pili assembly protein.
 
 
 0.998
SYN_01776
Pili assembly protein.
 
 
 0.992
SYN_01773
Hypothetical exported protein.
 
  
 0.985
SYN_01772
Type IV secretion; Outer membrane porin; Belongs to the bacterial secretin family.
 
 
 0.982
SYN_00452
Hypothetical membrane protein.
  
 
 0.874
SYN_01757
Hypothetical membrane protein.
 
  
 0.841
SYN_03778
Septum formation initiator; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
 
     0.808
SYN_01761
Pilin assembly protein.
 
  
 0.764
SYN_03714
Hypothetical exported protein.
  
   
 0.715
SYN_01284
General secretion pathway protein F.
 
 
 
 0.695
Your Current Organism:
Syntrophus aciditrophicus
NCBI taxonomy Id: 56780
Other names: S. aciditrophicus SB, Syntrophus aciditrophicus SB, Syntrophus aciditrophicus str. SB, Syntrophus aciditrophicus strain SB
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