Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
SYN_01857 | SYN_01858 | Outer membrane protein A protein family. | Protein-disulfide isomerase; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | 0.849 |
SYN_01857 | SYN_01862 | Outer membrane protein A protein family. | Hypothetical exported protein. | 0.777 |
SYN_01857 | SYN_01863 | Outer membrane protein A protein family. | Pilus assembly protein. | 0.856 |
SYN_01857 | SYN_01865 | Outer membrane protein A protein family. | Sex pilus assembly protein. | 0.861 |
SYN_01857 | SYN_01867 | Outer membrane protein A protein family. | Hypothetical exported protein. | 0.820 |
SYN_01857 | SYN_01868 | Outer membrane protein A protein family. | Hypothetical cytosolic protein. | 0.836 |
SYN_01857 | SYN_01869 | Outer membrane protein A protein family. | Conjugal DNA transfer protein. | 0.812 |
SYN_01857 | SYN_01873 | Outer membrane protein A protein family. | Hypothetical exported protein. | 0.868 |
SYN_01857 | SYN_01874 | Outer membrane protein A protein family. | Pilus assembly protein. | 0.855 |
SYN_01857 | SYN_01886 | Outer membrane protein A protein family. | DNA transfer in the process of conjugation and F pilus assembly protein. | 0.400 |
SYN_01858 | SYN_01857 | Protein-disulfide isomerase; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | Outer membrane protein A protein family. | 0.849 |
SYN_01858 | SYN_01862 | Protein-disulfide isomerase; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | Hypothetical exported protein. | 0.785 |
SYN_01858 | SYN_01863 | Protein-disulfide isomerase; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | Pilus assembly protein. | 0.893 |
SYN_01858 | SYN_01865 | Protein-disulfide isomerase; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | Sex pilus assembly protein. | 0.898 |
SYN_01858 | SYN_01867 | Protein-disulfide isomerase; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | Hypothetical exported protein. | 0.889 |
SYN_01858 | SYN_01868 | Protein-disulfide isomerase; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | Hypothetical cytosolic protein. | 0.887 |
SYN_01858 | SYN_01869 | Protein-disulfide isomerase; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | Conjugal DNA transfer protein. | 0.875 |
SYN_01858 | SYN_01873 | Protein-disulfide isomerase; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | Hypothetical exported protein. | 0.902 |
SYN_01858 | SYN_01874 | Protein-disulfide isomerase; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | Pilus assembly protein. | 0.896 |
SYN_01858 | SYN_01886 | Protein-disulfide isomerase; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | DNA transfer in the process of conjugation and F pilus assembly protein. | 0.434 |
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