Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SYN_00100 | SYN_01949 | SYN_00100 | SYN_01949 | Acetyltransferase, GNAT family. | acyl-CoA synthetase; NDP forming. | 0.972 |
SYN_00480 | SYN_01949 | SYN_00480 | SYN_01949 | acyl-CoA dehydrogenase, short-chain specific. | acyl-CoA synthetase; NDP forming. | 0.505 |
SYN_00480 | SYN_02201 | SYN_00480 | SYN_02201 | acyl-CoA dehydrogenase, short-chain specific. | Pyruvate dehydrogenase (ferredoxin/flavodoxin-dependent). | 0.729 |
SYN_01146 | SYN_01949 | SYN_01146 | SYN_01949 | acyl-CoA dehydrogenase. | acyl-CoA synthetase; NDP forming. | 0.505 |
SYN_01146 | SYN_02201 | SYN_01146 | SYN_02201 | acyl-CoA dehydrogenase. | Pyruvate dehydrogenase (ferredoxin/flavodoxin-dependent). | 0.729 |
SYN_01949 | SYN_00100 | SYN_01949 | SYN_00100 | acyl-CoA synthetase; NDP forming. | Acetyltransferase, GNAT family. | 0.972 |
SYN_01949 | SYN_00480 | SYN_01949 | SYN_00480 | acyl-CoA synthetase; NDP forming. | acyl-CoA dehydrogenase, short-chain specific. | 0.505 |
SYN_01949 | SYN_01146 | SYN_01949 | SYN_01146 | acyl-CoA synthetase; NDP forming. | acyl-CoA dehydrogenase. | 0.505 |
SYN_01949 | SYN_01951 | SYN_01949 | SYN_01951 | acyl-CoA synthetase; NDP forming. | Hypothetical cytosolic protein. | 0.545 |
SYN_01949 | SYN_02128 | SYN_01949 | SYN_02128 | acyl-CoA synthetase; NDP forming. | acyl-CoA dehydrogenase, long-chain specific. | 0.505 |
SYN_01949 | SYN_02201 | SYN_01949 | SYN_02201 | acyl-CoA synthetase; NDP forming. | Pyruvate dehydrogenase (ferredoxin/flavodoxin-dependent). | 0.415 |
SYN_01949 | SYN_02586 | SYN_01949 | SYN_02586 | acyl-CoA synthetase; NDP forming. | acyl-CoA dehydrogenase, medium-chain specific; Mediates the conversion of cyclohexane-1-carbonyl-CoA into cyclohex-1-ene-1-carbonyl-CoA in biosynthesis of cyclohexane-1- carboxylate, a by-product produced during fermentation of benzoate and crotonate to acetate. | 0.505 |
SYN_01949 | SYN_02587 | SYN_01949 | SYN_02587 | acyl-CoA synthetase; NDP forming. | acyl-CoA dehydrogenase, short-chain specific; Mediates the conversion of cyclohex-1-ene-1-carbonyl-CoA into (E)-2-cyclohex-1,5-diene-1-carbonyl-CoA in biosynthesis of cyclohexane- 1-carboxylate, a by-product produced during fermentation of benzoate and crotonate to acetate. Also able to further convert (E)-2-cyclohex- 1,5-diene-1-carbonyl-CoA to benzoyl-CoA. | 0.505 |
SYN_01949 | nfi | SYN_01949 | SYN_01952 | acyl-CoA synthetase; NDP forming. | Endonuclease V; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA. | 0.415 |
SYN_01951 | SYN_01949 | SYN_01951 | SYN_01949 | Hypothetical cytosolic protein. | acyl-CoA synthetase; NDP forming. | 0.545 |
SYN_01951 | nfi | SYN_01951 | SYN_01952 | Hypothetical cytosolic protein. | Endonuclease V; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA. | 0.572 |
SYN_02128 | SYN_01949 | SYN_02128 | SYN_01949 | acyl-CoA dehydrogenase, long-chain specific. | acyl-CoA synthetase; NDP forming. | 0.505 |
SYN_02128 | SYN_02201 | SYN_02128 | SYN_02201 | acyl-CoA dehydrogenase, long-chain specific. | Pyruvate dehydrogenase (ferredoxin/flavodoxin-dependent). | 0.729 |
SYN_02201 | SYN_00480 | SYN_02201 | SYN_00480 | Pyruvate dehydrogenase (ferredoxin/flavodoxin-dependent). | acyl-CoA dehydrogenase, short-chain specific. | 0.729 |
SYN_02201 | SYN_01146 | SYN_02201 | SYN_01146 | Pyruvate dehydrogenase (ferredoxin/flavodoxin-dependent). | acyl-CoA dehydrogenase. | 0.729 |
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