STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYN_01994ABC transporter ATP-binding protein. (244 aa)    
Predicted Functional Partners:
SYN_01995
Export ABC transporter permease protein.
 
 0.997
SYN_00854
Export ABC transporter permease protein.
 
 0.991
SYN_01993
Periplasmic component of efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.963
SYN_00852
Periplasmic component of efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.839
SYN_01342
Oligopeptide transport system permease protein.
 
 
  
 0.782
SYN_02462
Type I secretion outer membrane protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
 
 0.749
SYN_00022
ABC transporter permease protein.
 
 
 0.700
SYN_00884
Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.629
SYN_01996
Hypothetical exported protein.
       0.613
SYN_00023
ABC transporter permease protein.
 
 
 0.599
Your Current Organism:
Syntrophus aciditrophicus
NCBI taxonomy Id: 56780
Other names: S. aciditrophicus SB, Syntrophus aciditrophicus SB, Syntrophus aciditrophicus str. SB, Syntrophus aciditrophicus strain SB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.