STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYN_02005Response regulator protein with GGDEF domain. (355 aa)    
Predicted Functional Partners:
SYN_00875
Response regulator containing a CheY-like receiver domain and an HD-GYP domain.
 
 
 
 0.990
SYN_02801
Response regulator with GAF and HD domains.
 
 0.972
SYN_02721
HD domain / HAMP domain protein.
 
 0.970
SYN_01234
Response regulator receiver domain with sensory domain.
 
 0.961
SYN_00525
Predicted phosphohydrolase.
 
 
 0.955
SYN_00230
Response regulator receiver domain and a sigma factor phosphatase domain.
 
  
 0.942
SYN_00981
Response regulator with a winged-helix DNA-binding domain.
 
 
  
 0.906
SYN_02358
ABC transporter substrate-binding protein.
 
      0.864
SYN_00171
Predicted signal transduction protein.
 
      0.862
SYN_00099
Two-component response regulator.
 
 0.842
Your Current Organism:
Syntrophus aciditrophicus
NCBI taxonomy Id: 56780
Other names: S. aciditrophicus SB, Syntrophus aciditrophicus SB, Syntrophus aciditrophicus str. SB, Syntrophus aciditrophicus strain SB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.