STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYN_02068Paraquat-inducible protein B. (328 aa)    
Predicted Functional Partners:
SYN_02067
Hypothetical exported protein.
 
   
 0.959
SYN_02069
ABC-type transport system involved in resistance to organic solvents, ATPase component.
 
   
 0.917
SYN_02070
ABC transporter permease protein.
 
     0.891
SYN_02071
Swf/snf family helicase.
       0.613
SYN_01266
Surface lipoprotein.
  
  
 0.607
SYN_02063
Outer membrane protein.
 
     0.505
SYN_02064
Export ABC transporter permease protein.
       0.437
SYN_02065
Export ABC transporter ATP-binding protein / export ABC transporter permease protein.
       0.437
SYN_02066
hlyD family secretion protein.
       0.437
SYN_02072
mutT/nudix family protein.
  
    0.409
Your Current Organism:
Syntrophus aciditrophicus
NCBI taxonomy Id: 56780
Other names: S. aciditrophicus SB, Syntrophus aciditrophicus SB, Syntrophus aciditrophicus str. SB, Syntrophus aciditrophicus strain SB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.