Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
gcvP | tyrR | BAE46_05480 | BAE46_12595 | Glycine dehydrogenase (aminomethyl-transferring); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | DNA-binding transcriptional regulator TyrR; Regulates genes involved in the biosynthesis and transport of aromatic amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.452 |
maiA | phhA | BAE46_12600 | BAE46_12590 | Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phenylalanine-4-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.822 |
maiA | tyrR | BAE46_12600 | BAE46_12595 | Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-binding transcriptional regulator TyrR; Regulates genes involved in the biosynthesis and transport of aromatic amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.594 |
phhA | maiA | BAE46_12590 | BAE46_12600 | Phenylalanine-4-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.822 |
phhA | pspB | BAE46_12590 | BAE46_12580 | Phenylalanine-4-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phage shock protein B; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.501 |
phhA | tyrR | BAE46_12590 | BAE46_12595 | Phenylalanine-4-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-binding transcriptional regulator TyrR; Regulates genes involved in the biosynthesis and transport of aromatic amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.545 |
pspB | phhA | BAE46_12580 | BAE46_12590 | Phage shock protein B; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phenylalanine-4-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.501 |
pspB | tyrR | BAE46_12580 | BAE46_12595 | Phage shock protein B; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-binding transcriptional regulator TyrR; Regulates genes involved in the biosynthesis and transport of aromatic amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.424 |
rpoN | tyrR | BAE46_11065 | BAE46_12595 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-binding transcriptional regulator TyrR; Regulates genes involved in the biosynthesis and transport of aromatic amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.773 |
tyrR | gcvP | BAE46_12595 | BAE46_05480 | DNA-binding transcriptional regulator TyrR; Regulates genes involved in the biosynthesis and transport of aromatic amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology. | Glycine dehydrogenase (aminomethyl-transferring); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.452 |
tyrR | maiA | BAE46_12595 | BAE46_12600 | DNA-binding transcriptional regulator TyrR; Regulates genes involved in the biosynthesis and transport of aromatic amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology. | Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.594 |
tyrR | phhA | BAE46_12595 | BAE46_12590 | DNA-binding transcriptional regulator TyrR; Regulates genes involved in the biosynthesis and transport of aromatic amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phenylalanine-4-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.545 |
tyrR | pspB | BAE46_12595 | BAE46_12580 | DNA-binding transcriptional regulator TyrR; Regulates genes involved in the biosynthesis and transport of aromatic amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phage shock protein B; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.424 |
tyrR | rpoN | BAE46_12595 | BAE46_11065 | DNA-binding transcriptional regulator TyrR; Regulates genes involved in the biosynthesis and transport of aromatic amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.773 |