STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002088935_01148Unannotated protein. (406 aa)    
Predicted Functional Partners:
GCA_002088935_01906
Unannotated protein.
 
 
 0.969
GCA_002088935_01758
Unannotated protein.
 
 
 0.898
GCA_002088935_00836
Unannotated protein.
 
 
 0.895
GCA_002088935_01907
Unannotated protein.
  
 0.878
GCA_002088935_00249
Unannotated protein.
 
 0.873
GCA_002088935_01254
Unannotated protein.
    
 0.858
GCA_002088935_01150
Unannotated protein.
  
 
 0.734
GCA_002088935_00212
Unannotated protein.
   
 
 0.714
GCA_002088935_02589
Unannotated protein.
     
 0.714
GCA_002088935_00214
Unannotated protein.
   
 
 0.708
Your Current Organism:
Henriciella litoralis
NCBI taxonomy Id: 568102
Other names: DSM 22014, H. litoralis, Henriciella litoralis Lee et al. 2011, Hyphomonas sp. SD10, KACC 13700, strain SD10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.