STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002088935_03200Unannotated protein. (609 aa)    
Predicted Functional Partners:
GCA_002088935_03389
Unannotated protein.
   
 0.954
GCA_002088935_02400
Unannotated protein.
  
 
 0.922
GCA_002088935_00216
Unannotated protein.
  
 0.688
GCA_002088935_03275
Unannotated protein.
    
 0.667
GCA_002088935_03626
Unannotated protein.
    
 0.667
GCA_002088935_01568
Unannotated protein.
   
  0.649
GCA_002088935_01036
Unannotated protein.
    
 0.636
GCA_002088935_02582
Unannotated protein.
    
 0.636
GCA_002088935_03426
Unannotated protein.
    
 0.636
GCA_002088935_01023
Unannotated protein.
  
 
 0.627
Your Current Organism:
Henriciella litoralis
NCBI taxonomy Id: 568102
Other names: DSM 22014, H. litoralis, Henriciella litoralis Lee et al. 2011, Hyphomonas sp. SD10, KACC 13700, strain SD10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.