BVC80_9065g23 protein (Macleaya cordata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BVC80_9065g23

K Homology domain. (720 aa)

Predicted Functional Partners:

BVC80_1183g31

0.658

BVC80_9029g42

0.648

BVC80_9067g56

0.577

BVC80_1543g260

0.576

BVC80_339g34

0.570

BVC80_1723g16

0.566

BVC80_8963g38

0.559

BVC80_1181g12

0.544

BVC80_33g12

0.541

BVC80_1211g23

0.535

Your Current Organism:

Macleaya cordata

NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BVC80_1181g12	BVC80_1183g31	A0A200PQC4	A0A200PQ54	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Nuclear cap-binding protein subunit 2.	0.870
BVC80_1181g12	BVC80_1543g260	A0A200PQC4	A0A200R256	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.996
BVC80_1181g12	BVC80_1723g16	A0A200PQC4	A0A200QCF2	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	RNA polymerase.	0.994
BVC80_1181g12	BVC80_339g34	A0A200PQC4	A0A200QC91	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	RNA polymerase II.	0.996
BVC80_1181g12	BVC80_8963g38	A0A200PQC4	A0A200PV44	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA-directed RNA polymerase.	0.994
BVC80_1181g12	BVC80_9029g42	A0A200PQC4	A0A200QUS7	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	MIF4G-like.	0.882
BVC80_1181g12	BVC80_9065g23	A0A200PQC4	A0A200PNH2	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	K Homology domain.	0.544
BVC80_1183g31	BVC80_1181g12	A0A200PQ54	A0A200PQC4	Nuclear cap-binding protein subunit 2.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.870
BVC80_1183g31	BVC80_1543g260	A0A200PQ54	A0A200R256	Nuclear cap-binding protein subunit 2.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.887
BVC80_1183g31	BVC80_339g34	A0A200PQ54	A0A200QC91	Nuclear cap-binding protein subunit 2.	RNA polymerase II.	0.887
BVC80_1183g31	BVC80_8963g38	A0A200PQ54	A0A200PV44	Nuclear cap-binding protein subunit 2.	DNA-directed RNA polymerase.	0.916
BVC80_1183g31	BVC80_9029g42	A0A200PQ54	A0A200QUS7	Nuclear cap-binding protein subunit 2.	MIF4G-like.	0.998
BVC80_1183g31	BVC80_9065g23	A0A200PQ54	A0A200PNH2	Nuclear cap-binding protein subunit 2.	K Homology domain.	0.658
BVC80_1183g31	BVC80_9067g56	A0A200PQ54	A0A200PNT5	Nuclear cap-binding protein subunit 2.	JAB/MPN domain.	0.955
BVC80_1211g23	BVC80_9065g23	A0A200Q3C3	A0A200PNH2	Uncharacterized protein.	K Homology domain.	0.535
BVC80_1211g23	BVC80_9067g56	A0A200Q3C3	A0A200PNT5	Uncharacterized protein.	JAB/MPN domain.	0.956
BVC80_1543g260	BVC80_1181g12	A0A200R256	A0A200PQC4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.996
BVC80_1543g260	BVC80_1183g31	A0A200R256	A0A200PQ54	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Nuclear cap-binding protein subunit 2.	0.887
BVC80_1543g260	BVC80_1723g16	A0A200R256	A0A200QCF2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	RNA polymerase.	0.999
BVC80_1543g260	BVC80_339g34	A0A200R256	A0A200QC91	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	RNA polymerase II.	0.997