STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_1453g10Uncharacterized protein. (223 aa)    
Predicted Functional Partners:
BVC80_1679g26
Uncharacterized protein.
  
     0.524
BVC80_1543g288
Uncharacterized protein.
  
     0.517
BVC80_9091g73
Uncharacterized protein.
  
     0.516
BVC80_9095g40
AMP-dependent synthetase/ligase.
     
 0.516
BVC80_1751g164
Uncharacterized protein.
  
     0.515
BVC80_9065g75
Transcription factor.
  
     0.512
BVC80_1707g130
Uncharacterized protein.
  
     0.509
BVC80_1519g24
Uncharacterized protein.
  
     0.508
BVC80_1773g30
Calmodulin-binding domain.
  
     0.492
BVC80_9065g14
Tetratricopeptide repeat-containing domain.
  
     0.491
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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