STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_1263g18Ubiquitin domain. (1900 aa)    
Predicted Functional Partners:
BVC80_8793g23
TAFII28-like protein.
    
 0.998
BVC80_1211g117
Peptidase M1.
   
 0.998
BVC80_1755g27
TATA box binding protein associated factor (TAF).
    
 0.998
BVC80_1543g13
TAFII55 protein.
    
 0.998
BVC80_1271g23
Transcription initiation factor TAFII31.
    
 0.997
BVC80_1787g8
Transcription initiation factor TFIID.
    
 0.997
BVC80_1181g12
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.992
BVC80_1651g96
Transcription initiation factor TFIID.
    
 0.991
BVC80_9047g36
Transcription initiation factor TFIID component TAF4.
    
 0.991
BVC80_9047g37
RST domain of plant C-terminal.
    
 0.991
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
Server load: low (22%) [HD]