Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_8787g32F-box domain. (420 aa)    
Predicted Functional Partners:
BVC80_9047g30
Uncharacterized protein.
  
 
  0.527
BVC80_927g7
Uncharacterized protein.
  
     0.510
BVC80_9093g114
Pentatricopeptide repeat.
  
     0.501
BVC80_849g15
Bet v I domain.
  
     0.501
BVC80_1279g8
NAC domain.
  
 
   0.483
BVC80_1785g6
BTB/POZ-like.
  
     0.480
BVC80_1739g26
Uncharacterized protein.
  
     0.476
BVC80_1833g150
Uncharacterized protein.
  
     0.468
BVC80_1835g130
Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain.
  
     0.467
BVC80_1169g35
Remorin.
  
     0.465
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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