BVC80_9099g32 protein (Macleaya cordata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BVC80_9099g32

Uncharacterized protein. (820 aa)

Predicted Functional Partners:

BVC80_8883g5

0.460

BVC80_1421g29

0.458

BVC80_1403g21

0.440

BVC80_1741g14

0.439

BVC80_1835g752

0.438

BVC80_8425g9

0.436

BVC80_8555g6

0.424

BVC80_1799g59

0.420

BVC80_209g38

0.415

BVC80_8897g5

0.400

Your Current Organism:

Macleaya cordata

NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BVC80_1403g21	BVC80_1835g752	A0A200Q195	A0A200R6I5	BRCT domain.	Uncharacterized protein.	0.427
BVC80_1403g21	BVC80_9099g32	A0A200Q195	A0A200PVN1	BRCT domain.	Uncharacterized protein.	0.440
BVC80_1421g29	BVC80_9099g32	A0A200Q8N2	A0A200PVN1	DENN domain.	Uncharacterized protein.	0.458
BVC80_1741g14	BVC80_8425g9	A0A200QKM6	A0A200QXJ2	Clathrin.	Uncharacterized protein.	0.455
BVC80_1741g14	BVC80_9099g32	A0A200QKM6	A0A200PVN1	Clathrin.	Uncharacterized protein.	0.439
BVC80_1799g59	BVC80_8425g9	A0A200QPJ6	A0A200QXJ2	Uncharacterized protein.	Uncharacterized protein.	0.468
BVC80_1799g59	BVC80_8883g5	A0A200QPJ6	A0A200Q7C4	Uncharacterized protein.	SANT domain.	0.432
BVC80_1799g59	BVC80_9099g32	A0A200QPJ6	A0A200PVN1	Uncharacterized protein.	Uncharacterized protein.	0.420
BVC80_1835g752	BVC80_1403g21	A0A200R6I5	A0A200Q195	Uncharacterized protein.	BRCT domain.	0.427
BVC80_1835g752	BVC80_9099g32	A0A200R6I5	A0A200PVN1	Uncharacterized protein.	Uncharacterized protein.	0.438
BVC80_209g38	BVC80_9099g32	A0A200QCU2	A0A200PVN1	Tetrapyrrole biosynthesis regulator FLU.	Uncharacterized protein.	0.415
BVC80_8425g9	BVC80_1741g14	A0A200QXJ2	A0A200QKM6	Uncharacterized protein.	Clathrin.	0.455
BVC80_8425g9	BVC80_1799g59	A0A200QXJ2	A0A200QPJ6	Uncharacterized protein.	Uncharacterized protein.	0.468
BVC80_8425g9	BVC80_9099g32	A0A200QXJ2	A0A200PVN1	Uncharacterized protein.	Uncharacterized protein.	0.436
BVC80_8555g6	BVC80_8897g5	A0A200QV94	A0A200Q3U7	Uncharacterized protein.	Uncharacterized protein.	0.443
BVC80_8555g6	BVC80_9099g32	A0A200QV94	A0A200PVN1	Uncharacterized protein.	Uncharacterized protein.	0.424
BVC80_8883g5	BVC80_1799g59	A0A200Q7C4	A0A200QPJ6	SANT domain.	Uncharacterized protein.	0.432
BVC80_8883g5	BVC80_9099g32	A0A200Q7C4	A0A200PVN1	SANT domain.	Uncharacterized protein.	0.460
BVC80_8897g5	BVC80_8555g6	A0A200Q3U7	A0A200QV94	Uncharacterized protein.	Uncharacterized protein.	0.443
BVC80_8897g5	BVC80_9099g32	A0A200Q3U7	A0A200PVN1	Uncharacterized protein.	Uncharacterized protein.	0.400