BVC80_1651g14 protein (Macleaya cordata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BVC80_1651g14

F-box domain. (491 aa)

Predicted Functional Partners:

BVC80_1821g91

0.528

BVC80_983g7

0.523

BVC80_715g3

0.520

BVC80_209g213

0.519

BVC80_8653g9

0.518

BVC80_7725g6

0.514

BVC80_551g57

0.511

BVC80_983g8

0.509

BVC80_1827g91

0.508

BVC80_9097g120

0.504

Your Current Organism:

Macleaya cordata

NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BVC80_1651g14	BVC80_1821g91	A0A200PZ95	A0A200QZM2	F-box domain.	Uncharacterized protein.	0.528
BVC80_1651g14	BVC80_1827g91	A0A200PZ95	A0A200QB78	F-box domain.	Uncharacterized protein.	0.508
BVC80_1651g14	BVC80_209g213	A0A200PZ95	A0A200QDB6	F-box domain.	Uncharacterized protein.	0.519
BVC80_1651g14	BVC80_551g57	A0A200PZ95	A0A200QE62	F-box domain.	Uncharacterized protein.	0.511
BVC80_1651g14	BVC80_715g3	A0A200PZ95	A0A200PM83	F-box domain.	Uncharacterized protein.	0.520
BVC80_1651g14	BVC80_7725g6	A0A200PZ95	A0A200Q1I2	F-box domain.	Uncharacterized protein.	0.514
BVC80_1651g14	BVC80_8653g9	A0A200PZ95	A0A200Q8A4	F-box domain.	Uncharacterized protein.	0.518
BVC80_1651g14	BVC80_9097g120	A0A200PZ95	A0A200QF83	F-box domain.	Uncharacterized protein.	0.504
BVC80_1651g14	BVC80_983g7	A0A200PZ95	A0A200QQL0	F-box domain.	Late embryogenesis abundant protein.	0.523
BVC80_1651g14	BVC80_983g8	A0A200PZ95	A0A200QQG3	F-box domain.	Late embryogenesis abundant protein.	0.509
BVC80_1821g91	BVC80_1651g14	A0A200QZM2	A0A200PZ95	Uncharacterized protein.	F-box domain.	0.528
BVC80_1821g91	BVC80_1827g91	A0A200QZM2	A0A200QB78	Uncharacterized protein.	Uncharacterized protein.	0.504
BVC80_1821g91	BVC80_209g213	A0A200QZM2	A0A200QDB6	Uncharacterized protein.	Uncharacterized protein.	0.477
BVC80_1821g91	BVC80_551g57	A0A200QZM2	A0A200QE62	Uncharacterized protein.	Uncharacterized protein.	0.448
BVC80_1821g91	BVC80_715g3	A0A200QZM2	A0A200PM83	Uncharacterized protein.	Uncharacterized protein.	0.498
BVC80_1821g91	BVC80_7725g6	A0A200QZM2	A0A200Q1I2	Uncharacterized protein.	Uncharacterized protein.	0.495
BVC80_1821g91	BVC80_8653g9	A0A200QZM2	A0A200Q8A4	Uncharacterized protein.	Uncharacterized protein.	0.504
BVC80_1821g91	BVC80_9097g120	A0A200QZM2	A0A200QF83	Uncharacterized protein.	Uncharacterized protein.	0.484
BVC80_1821g91	BVC80_983g7	A0A200QZM2	A0A200QQL0	Uncharacterized protein.	Late embryogenesis abundant protein.	0.474
BVC80_1821g91	BVC80_983g8	A0A200QZM2	A0A200QQG3	Uncharacterized protein.	Late embryogenesis abundant protein.	0.504