STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_8675g17Leucine-rich repeat. (1386 aa)    
Predicted Functional Partners:
BVC80_9089g62
Asp/Glu/hydantoin racemase.
    
 0.831
BVC80_9027g40
Autophagy protein 5; Required for autophagy.
     
 0.798
BVC80_209g88
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.
     
 0.797
BVC80_1819g14
Peptidase S9; Belongs to the peptidase S9B family.
    
   0.717
BVC80_1837g456
WD40 repeat.
    
 0.701
BVC80_1065g93
WD40 repeat.
    
 0.701
BVC80_1265g10
Tetratricopeptide repeat.
    
 0.619
BVC80_1265g9
CS domain.
    
 0.619
BVC80_737g20
CS domain.
    
 0.619
BVC80_379g81
Ribosomal protein S27a.
    
  0.618
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.