STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_1629g12Bromodomain. (633 aa)    
Predicted Functional Partners:
BVC80_1395g90
SNF2-related.
    
 
 0.670
BVC80_1543g13
TAFII55 protein.
    
 
 0.618
BVC80_1781g61
Bromodomain.
    
 
 0.495
BVC80_373g7
Uncharacterized protein.
  
     0.487
BVC80_1795g29
Uncharacterized protein.
  
 
   0.477
BVC80_8915g16
RNA recognition motif domain.
  
 
   0.476
BVC80_1543g43
Uncharacterized protein.
  
     0.468
BVC80_9091g10
Pre-mRNA polyadenylation factor Fip1.
  
 
   0.453
BVC80_1741g78
Zinc finger protein.
  
     0.451
BVC80_9037g27
Myc-type.
  
 
   0.448
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.