BVC80_1211g79 protein (Macleaya cordata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BVC80_1211g79

Uncharacterized protein. (82 aa)

Predicted Functional Partners:

BVC80_909g5

0.897

BVC80_205g19

0.890

BVC80_8645g8

0.890

BVC80_2411g1

0.635

BVC80_1395g73

0.627

BVC80_1395g74

0.617

BVC80_7269g1

0.614

BVC80_9095g40

0.570

BVC80_1831g325

0.518

BVC80_1211g49

0.513

Your Current Organism:

Macleaya cordata

NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BVC80_1211g49	BVC80_1211g79	A0A200Q3F5	A0A200Q3G9	NAC domain.	Uncharacterized protein.	0.513
BVC80_1211g49	BVC80_2411g1	A0A200Q3F5	A0A200R8T9	NAC domain.	Transferase.	0.499
BVC80_1211g49	BVC80_7269g1	A0A200Q3F5	A0A200QMF5	NAC domain.	Uncharacterized protein.	0.490
BVC80_1211g79	BVC80_1211g49	A0A200Q3G9	A0A200Q3F5	Uncharacterized protein.	NAC domain.	0.513
BVC80_1211g79	BVC80_1395g73	A0A200Q3G9	A0A200Q1K5	Uncharacterized protein.	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	0.627
BVC80_1211g79	BVC80_1395g74	A0A200Q3G9	A0A200Q1L1	Uncharacterized protein.	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	0.617
BVC80_1211g79	BVC80_1831g325	A0A200Q3G9	A0A200R7U2	Uncharacterized protein.	NAD-dependent epimerase/dehydratase.	0.518
BVC80_1211g79	BVC80_205g19	A0A200Q3G9	A0A200PYS6	Uncharacterized protein.	Phosphoadenosine phosphosulfate reductase.	0.890
BVC80_1211g79	BVC80_2411g1	A0A200Q3G9	A0A200R8T9	Uncharacterized protein.	Transferase.	0.635
BVC80_1211g79	BVC80_7269g1	A0A200Q3G9	A0A200QMF5	Uncharacterized protein.	Uncharacterized protein.	0.614
BVC80_1211g79	BVC80_8645g8	A0A200Q3G9	A0A200QBF4	Uncharacterized protein.	Phosphoadenosine phosphosulfate reductase.	0.890
BVC80_1211g79	BVC80_9095g40	A0A200Q3G9	A0A200PXA7	Uncharacterized protein.	AMP-dependent synthetase/ligase.	0.570
BVC80_1211g79	BVC80_909g5	A0A200Q3G9	A0A200QET5	Uncharacterized protein.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.897
BVC80_1395g73	BVC80_1211g79	A0A200Q1K5	A0A200Q3G9	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	Uncharacterized protein.	0.627
BVC80_1395g73	BVC80_2411g1	A0A200Q1K5	A0A200R8T9	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	Transferase.	0.462
BVC80_1395g73	BVC80_9095g40	A0A200Q1K5	A0A200PXA7	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	AMP-dependent synthetase/ligase.	0.978
BVC80_1395g74	BVC80_1211g79	A0A200Q1L1	A0A200Q3G9	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	Uncharacterized protein.	0.617
BVC80_1395g74	BVC80_2411g1	A0A200Q1L1	A0A200R8T9	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	Transferase.	0.462
BVC80_1395g74	BVC80_9095g40	A0A200Q1L1	A0A200PXA7	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	AMP-dependent synthetase/ligase.	0.978
BVC80_1831g325	BVC80_1211g79	A0A200R7U2	A0A200Q3G9	NAD-dependent epimerase/dehydratase.	Uncharacterized protein.	0.518