STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_441g99rRNA-processing protein EFG1. (410 aa)    
Predicted Functional Partners:
BVC80_9091g165
Ribosome biogenesis protein Nop16.
   
    0.900
BVC80_1787g268
Uncharacterized protein.
   
    0.867
BVC80_949g65
rRNA processing.
   
    0.758
BVC80_8703g14
Helicase.
   
   0.746
BVC80_8573g3
RNA recognition motif domain.
   
    0.737
BVC80_949g62
Nop domain.
   
   0.658
BVC80_1065g160
Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.
   
   0.584
BVC80_9037g6
Sas10/Utp3/C1D.
   
    0.575
BVC80_715g52
Apoptosis-antagonizing transcription factor.
   
    0.574
BVC80_1827g57
Eukaryotic rRNA processing.
   
    0.568
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.