STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_441g214Uncharacterized protein. (283 aa)    
Predicted Functional Partners:
BVC80_7755g3
Zinc finger protein.
   
 0.988
BVC80_7855g2
WD40 repeat.
   
 0.970
BVC80_441g285
RNA polymerase II subunit A.
    
 0.967
BVC80_1833g38
Beta-lactamase-like.
    
 0.906
BVC80_5361g1
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.890
BVC80_1787g120
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.890
BVC80_1837g362
SANT/Myb domain.
    
 0.890
BVC80_8873g11
WD40 repeat.
    
 0.889
BVC80_887g72
WD40 repeat.
    
 0.889
BVC80_1827g77
Cleavage/polyadenylation specificity factor.
    
 0.887
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.