BVC80_6553g1 protein (Macleaya cordata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BVC80_6553g1

Glycoside hydrolase. (103 aa)

Predicted Functional Partners:

BVC80_9097g120

0.543

BVC80_849g14

0.542

BVC80_671g2

0.542

BVC80_8653g9

0.540

BVC80_237g1

0.539

BVC80_209g213

0.537

BVC80_1421g22

0.536

BVC80_7725g6

0.531

BVC80_9101g68

0.531

BVC80_1773g22

0.531

Your Current Organism:

Macleaya cordata

NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BVC80_1421g22	BVC80_1773g22	A0A200Q8M3	A0A200QNT7	Uncharacterized protein.	F-box domain.	0.531
BVC80_1421g22	BVC80_209g213	A0A200Q8M3	A0A200QDB6	Uncharacterized protein.	Uncharacterized protein.	0.524
BVC80_1421g22	BVC80_237g1	A0A200Q8M3	A0A200RB15	Uncharacterized protein.	Peptidase C1A.	0.540
BVC80_1421g22	BVC80_6553g1	A0A200Q8M3	A0A200QBH2	Uncharacterized protein.	Glycoside hydrolase.	0.536
BVC80_1421g22	BVC80_671g2	A0A200Q8M3	A0A200Q809	Uncharacterized protein.	Bet v I domain.	0.534
BVC80_1421g22	BVC80_7725g6	A0A200Q8M3	A0A200Q1I2	Uncharacterized protein.	Uncharacterized protein.	0.540
BVC80_1421g22	BVC80_849g14	A0A200Q8M3	A0A200Q0V8	Uncharacterized protein.	Bet v I domain.	0.530
BVC80_1421g22	BVC80_8653g9	A0A200Q8M3	A0A200Q8A4	Uncharacterized protein.	Uncharacterized protein.	0.533
BVC80_1421g22	BVC80_9097g120	A0A200Q8M3	A0A200QF83	Uncharacterized protein.	Uncharacterized protein.	0.535
BVC80_1421g22	BVC80_9101g68	A0A200Q8M3	A0A200QGH2	Uncharacterized protein.	F-box domain.	0.523
BVC80_1773g22	BVC80_1421g22	A0A200QNT7	A0A200Q8M3	F-box domain.	Uncharacterized protein.	0.531
BVC80_1773g22	BVC80_209g213	A0A200QNT7	A0A200QDB6	F-box domain.	Uncharacterized protein.	0.532
BVC80_1773g22	BVC80_237g1	A0A200QNT7	A0A200RB15	F-box domain.	Peptidase C1A.	0.534
BVC80_1773g22	BVC80_6553g1	A0A200QNT7	A0A200QBH2	F-box domain.	Glycoside hydrolase.	0.531
BVC80_1773g22	BVC80_671g2	A0A200QNT7	A0A200Q809	F-box domain.	Bet v I domain.	0.525
BVC80_1773g22	BVC80_7725g6	A0A200QNT7	A0A200Q1I2	F-box domain.	Uncharacterized protein.	0.519
BVC80_1773g22	BVC80_849g14	A0A200QNT7	A0A200Q0V8	F-box domain.	Bet v I domain.	0.530
BVC80_1773g22	BVC80_8653g9	A0A200QNT7	A0A200Q8A4	F-box domain.	Uncharacterized protein.	0.526
BVC80_1773g22	BVC80_9097g120	A0A200QNT7	A0A200QF83	F-box domain.	Uncharacterized protein.	0.528
BVC80_1773g22	BVC80_9101g68	A0A200QNT7	A0A200QGH2	F-box domain.	F-box domain.	0.507