STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_1725g3PWI domain-containing protein. (95 aa)    
Predicted Functional Partners:
BVC80_9033g59
PWI domain.
   
 0.869
BVC80_123g4
LUC7-related.
   
 0.817
BVC80_1741g30
LUC7-related.
   
 0.817
BVC80_1569g17
LUC7-related.
   
 0.817
BVC80_1395g98
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
   
 
 0.796
BVC80_9029g42
MIF4G-like.
   
 
 0.790
BVC80_1183g31
Nuclear cap-binding protein subunit 2.
   
 
 0.762
BVC80_1211g72
Protein kinase domain.
   
  0.749
BVC80_1633g3
RNA recognition motif domain.
   
 0.742
BVC80_243g55
Small nuclear ribonucleoprotein-associated protein.
   
 
 0.739
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.