BVC80_8745g9 protein (Macleaya cordata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BVC80_8745g9

Protein kinase domain. (612 aa)

Predicted Functional Partners:

BVC80_157g82

0.528

BVC80_1317g5

0.493

BVC80_8055g2

0.484

BVC80_8551g2

0.475

BVC80_497g15

0.471

BVC80_8985g39

0.468

BVC80_1831g143

0.468

BVC80_1715g50

0.441

BVC80_1395g35

0.434

BVC80_175g2

0.430

Your Current Organism:

Macleaya cordata

NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BVC80_1317g5	BVC80_157g82	A0A200QYX0	A0A200RC54	Protein kinase domain; Belongs to the protein kinase superfamily.	Cyclic nucleotide-binding domain.	0.913
BVC80_1317g5	BVC80_8551g2	A0A200QYX0	A0A200QV75	Protein kinase domain; Belongs to the protein kinase superfamily.	Protein kinase domain; Belongs to the protein kinase superfamily.	0.903
BVC80_1317g5	BVC80_8745g9	A0A200QYX0	A0A200QG61	Protein kinase domain; Belongs to the protein kinase superfamily.	Protein kinase domain.	0.493
BVC80_1395g35	BVC80_1831g143	A0A200Q1K4	A0A200R7E3	Protein kinase domain.	Protein kinase domain; Belongs to the protein kinase superfamily.	0.426
BVC80_1395g35	BVC80_497g15	A0A200Q1K4	A0A200Q8R3	Protein kinase domain.	Protein kinase domain; Belongs to the protein kinase superfamily.	0.420
BVC80_1395g35	BVC80_8055g2	A0A200Q1K4	A0A200PMG6	Protein kinase domain.	Protein kinase domain; Belongs to the protein kinase superfamily.	0.924
BVC80_1395g35	BVC80_8551g2	A0A200Q1K4	A0A200QV75	Protein kinase domain.	Protein kinase domain; Belongs to the protein kinase superfamily.	0.504
BVC80_1395g35	BVC80_8745g9	A0A200Q1K4	A0A200QG61	Protein kinase domain.	Protein kinase domain.	0.434
BVC80_1395g35	BVC80_8985g39	A0A200Q1K4	A0A200QJ87	Protein kinase domain.	Protein kinase domain; Belongs to the protein kinase superfamily.	0.420
BVC80_157g82	BVC80_1317g5	A0A200RC54	A0A200QYX0	Cyclic nucleotide-binding domain.	Protein kinase domain; Belongs to the protein kinase superfamily.	0.913
BVC80_157g82	BVC80_175g2	A0A200RC54	A0A200QZY5	Cyclic nucleotide-binding domain.	Protein kinase domain; Belongs to the protein kinase superfamily.	0.565
BVC80_157g82	BVC80_1831g143	A0A200RC54	A0A200R7E3	Cyclic nucleotide-binding domain.	Protein kinase domain; Belongs to the protein kinase superfamily.	0.913
BVC80_157g82	BVC80_497g15	A0A200RC54	A0A200Q8R3	Cyclic nucleotide-binding domain.	Protein kinase domain; Belongs to the protein kinase superfamily.	0.913
BVC80_157g82	BVC80_8551g2	A0A200RC54	A0A200QV75	Cyclic nucleotide-binding domain.	Protein kinase domain; Belongs to the protein kinase superfamily.	0.913
BVC80_157g82	BVC80_8745g9	A0A200RC54	A0A200QG61	Cyclic nucleotide-binding domain.	Protein kinase domain.	0.528
BVC80_157g82	BVC80_8985g39	A0A200RC54	A0A200QJ87	Cyclic nucleotide-binding domain.	Protein kinase domain; Belongs to the protein kinase superfamily.	0.913
BVC80_1715g50	BVC80_8745g9	A0A200Q245	A0A200QG61	RNA recognition motif domain.	Protein kinase domain.	0.441
BVC80_175g2	BVC80_157g82	A0A200QZY5	A0A200RC54	Protein kinase domain; Belongs to the protein kinase superfamily.	Cyclic nucleotide-binding domain.	0.565
BVC80_175g2	BVC80_8745g9	A0A200QZY5	A0A200QG61	Protein kinase domain; Belongs to the protein kinase superfamily.	Protein kinase domain.	0.430
BVC80_1831g143	BVC80_1395g35	A0A200R7E3	A0A200Q1K4	Protein kinase domain; Belongs to the protein kinase superfamily.	Protein kinase domain.	0.426