STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_9101g297Ribonuclease III domain. (572 aa)    
Predicted Functional Partners:
BVC80_1751g60
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.809
BVC80_1791g41
Ribosomal protein S6.
   
 
 0.805
BVC80_9045g56
Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.798
BVC80_8967g35
Ribosomal protein S16.
  
 
 0.789
BVC80_9017g37
Ribosomal protein S23/S29.
   
 
 0.763
BVC80_733g29
Ribosomal protein/NADH dehydrogenase domain.
   
 
 0.749
BVC80_9067g57
Ribosomal protein S24/S35.
   
   0.740
BVC80_8893g45
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.737
BVC80_209g308
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.737
BVC80_1721g32
Uncharacterized protein.
   
 
 0.730
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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