STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_917g48Alpha carbonic anhydrase. (72 aa)    
Predicted Functional Partners:
BVC80_9095g64
Ribosomal protein L18/L5.
    
 
 0.598
BVC80_8895g27
Ribosomal protein L18/L5.
    
 
 0.598
BVC80_1327g5
Brix domain.
   
 
 0.578
BVC80_9071g23
Brix domain.
   
 
 0.578
BVC80_9091g151
Brix domain.
   
    0.573
BVC80_1831g271
Pumilio RNA-binding repeat.
   
    0.545
BVC80_9089g82
WD40 repeat.
   
    0.542
BVC80_9089g26
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
   0.506
BVC80_459g5
WD40 repeat.
   
    0.505
BVC80_9051g49
Ribosome biogenesis protein BMS1/TSR1.
   
  
 0.486
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.