STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_917g24Pentatricopeptide repeat. (639 aa)    
Predicted Functional Partners:
BVC80_1835g657
RNase P subunit p30.
   
 
 0.907
BVC80_1651g100
Ribonuclease Zc3h12a-like.
  
  
 
0.877
BVC80_1835g568
Uncharacterized protein.
     
 0.876
BVC80_1693g17
Ribonuclease P/MRP.
   
 
 0.810
BVC80_9091g15
Ribonuclease P/MRP.
   
 
 0.810
BVC80_8199g3
tRNA (Guanine-N1-)-methyltransferase.
   
 0.474
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
Server load: low (22%) [HD]