STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_53g6DNA-directed DNA polymerase. (519 aa)    
Predicted Functional Partners:
BVC80_8695g14
XPG/Rad2 endonuclease.
  
 
 0.802
BVC80_8843g2
DNA repair protein Rad50.
  
 
 0.763
BVC80_441g157
Tify.
   
 0.753
BVC80_8713g9
Uncharacterized protein.
   
 0.753
BVC80_1725g37
DNA ligase.
  
 0.718
BVC80_1725g36
Uncharacterized protein.
  
 0.718
BVC80_9031g31
Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
   
 
 0.711
BVC80_8775g33
Fanconi anemia group I protein.
   
 0.697
BVC80_8979g22
ERCC4 domain.
   
 
 0.693
BVC80_883g24
DNA repair protein rad10.
     
 0.693
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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