STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_645g41Peptidase A1; Belongs to the peptidase A1 family. (500 aa)    
Predicted Functional Partners:
BVC80_8963g44
Granulin; Belongs to the peptidase C1 family.
   
 0.541
BVC80_551g8
Granulin; Belongs to the peptidase C1 family.
   
 0.541
BVC80_1821g52
Peptidase C1A.
   
 0.541
BVC80_1821g51
Granulin; Belongs to the peptidase C1 family.
   
 0.541
BVC80_8489g8
Granulin; Belongs to the peptidase C1 family.
   
 0.541
BVC80_887g57
Peptidase C1A; Belongs to the peptidase C1 family.
   
 0.541
BVC80_1267g1
Polyketide cyclase SnoaL-like domain.
      
 0.420
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.