STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_9001g25Uncharacterized protein. (453 aa)    
Predicted Functional Partners:
BVC80_9053g64
Ferredoxin--NADP reductase, chloroplastic; Belongs to the ferredoxin--NADP reductase type 1 family.
   
  
 0.599
BVC80_9097g212
Pre-rRNA-processing protein IPI1/Testis-expressed sequence 10 protein.
    
 0.572
BVC80_8997g37
Photosystem II PsbQ.
  
  0.555
BVC80_1715g98
NAD(P)-bd_dom domain-containing protein.
   
 
 0.553
BVC80_8917g16
Photosystem II PsbQ.
  
  0.549
BVC80_427g1
Uncharacterized protein.
  
 
  0.500
BVC80_9099g133
Uncharacterized protein.
   
  
 0.486
BVC80_1413g11
Uncharacterized protein.
  
 
  0.486
BVC80_1039g1
Uncharacterized protein.
  
     0.479
BVC80_7725g7
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
  0.474
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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