STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_1805g48Filament-like plant protein. (1068 aa)    
Predicted Functional Partners:
BVC80_1737g9
tRNA transferase Trm5/Tyw2.
      
 0.507
BVC80_1101g21
Myc-type.
  
     0.493
BVC80_1835g503
Zinc finger protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
      
 0.487
BVC80_1101g41
Uncharacterized protein.
  
     0.486
BVC80_1819g46
Uncharacterized protein.
  
     0.485
BVC80_1709g13
Uncharacterized protein.
  
     0.482
BVC80_285g94
NAC domain.
  
     0.479
BVC80_1833g148
Uncharacterized protein.
  
     0.477
BVC80_1781g24
DUF4408 domain-containing protein.
  
     0.473
BVC80_8655g13
Uncharacterized protein.
  
     0.468
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.