Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BVC80_1183g31 | BVC80_1395g98 | A0A200PQ54 | A0A200Q1M6 | Nuclear cap-binding protein subunit 2. | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. | 0.963 |
BVC80_1183g31 | BVC80_339g26 | A0A200PQ54 | A0A200QCB3 | Nuclear cap-binding protein subunit 2. | RNA recognition motif domain. | 0.938 |
BVC80_1183g31 | BVC80_715g20 | A0A200PQ54 | A0A200PM87 | Nuclear cap-binding protein subunit 2. | RNA recognition motif domain. | 0.792 |
BVC80_1183g31 | BVC80_7775g3 | A0A200PQ54 | A0A200QC44 | Nuclear cap-binding protein subunit 2. | K Homology domain. | 0.658 |
BVC80_1183g31 | BVC80_8555g9 | A0A200PQ54 | A0A200QVA2 | Nuclear cap-binding protein subunit 2. | K Homology domain. | 0.658 |
BVC80_1183g31 | BVC80_8747g12 | A0A200PQ54 | A0A200QG55 | Nuclear cap-binding protein subunit 2. | RNA recognition motif domain. | 0.427 |
BVC80_1183g31 | BVC80_8917g39 | A0A200PQ54 | A0A200QRQ8 | Nuclear cap-binding protein subunit 2. | RNA recognition motif domain. | 0.592 |
BVC80_1183g31 | BVC80_9029g42 | A0A200PQ54 | A0A200QUS7 | Nuclear cap-binding protein subunit 2. | MIF4G-like. | 0.998 |
BVC80_1183g31 | BVC80_9099g139 | A0A200PQ54 | A0A200PVV4 | Nuclear cap-binding protein subunit 2. | RNA recognition motif domain. | 0.427 |
BVC80_1395g98 | BVC80_1183g31 | A0A200Q1M6 | A0A200PQ54 | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. | Nuclear cap-binding protein subunit 2. | 0.963 |
BVC80_1395g98 | BVC80_339g26 | A0A200Q1M6 | A0A200QCB3 | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. | RNA recognition motif domain. | 0.845 |
BVC80_1395g98 | BVC80_715g20 | A0A200Q1M6 | A0A200PM87 | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. | RNA recognition motif domain. | 0.442 |
BVC80_1395g98 | BVC80_8917g39 | A0A200Q1M6 | A0A200QRQ8 | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. | RNA recognition motif domain. | 0.566 |
BVC80_1395g98 | BVC80_9029g42 | A0A200Q1M6 | A0A200QUS7 | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. | MIF4G-like. | 0.972 |
BVC80_339g26 | BVC80_1183g31 | A0A200QCB3 | A0A200PQ54 | RNA recognition motif domain. | Nuclear cap-binding protein subunit 2. | 0.938 |
BVC80_339g26 | BVC80_1395g98 | A0A200QCB3 | A0A200Q1M6 | RNA recognition motif domain. | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. | 0.845 |
BVC80_339g26 | BVC80_715g20 | A0A200QCB3 | A0A200PM87 | RNA recognition motif domain. | RNA recognition motif domain. | 0.802 |
BVC80_339g26 | BVC80_7775g3 | A0A200QCB3 | A0A200QC44 | RNA recognition motif domain. | K Homology domain. | 0.419 |
BVC80_339g26 | BVC80_8555g9 | A0A200QCB3 | A0A200QVA2 | RNA recognition motif domain. | K Homology domain. | 0.419 |
BVC80_339g26 | BVC80_8747g12 | A0A200QCB3 | A0A200QG55 | RNA recognition motif domain. | RNA recognition motif domain. | 0.821 |
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