BVC80_1039g12 protein (Macleaya cordata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BVC80_1039g12

Zinc finger protein. (306 aa)

Predicted Functional Partners:

BVC80_1343g7

0.882

BVC80_1433g20

0.620

BVC80_479g36

0.515

BVC80_1289g20

0.515

BVC80_1749g22

0.515

BVC80_491g2

0.502

BVC80_1821g92

0.502

BVC80_9085g10

0.459

BVC80_9069g86

0.424

BVC80_9069g81

0.424

Your Current Organism:

Macleaya cordata

NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BVC80_1039g12	BVC80_1289g20	A0A200QVN9	A0A200Q9H7	Zinc finger protein.	Ubiquitin-conjugating enzyme.	0.515
BVC80_1039g12	BVC80_1343g7	A0A200QVN9	A0A200QKL7	Zinc finger protein.	CS domain.	0.882
BVC80_1039g12	BVC80_1433g20	A0A200QVN9	A0A200QBW3	Zinc finger protein.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.620
BVC80_1039g12	BVC80_1749g22	A0A200QVN9	A0A200QL80	Zinc finger protein.	Caleosin.	0.515
BVC80_1039g12	BVC80_1821g92	A0A200QVN9	A0A200QZN3	Zinc finger protein.	WD40 repeat.	0.502
BVC80_1039g12	BVC80_479g36	A0A200QVN9	A0A200Q7P5	Zinc finger protein.	Ubiquitin-conjugating enzyme.	0.515
BVC80_1039g12	BVC80_491g2	A0A200QVN9	A0A200Q8T6	Zinc finger protein.	WD40 repeat.	0.502
BVC80_1039g12	BVC80_9069g81	A0A200QVN9	A0A200PP30	Zinc finger protein.	Transmembrane protein TauE like.	0.424
BVC80_1039g12	BVC80_9069g86	A0A200QVN9	A0A200PP17	Zinc finger protein.	Transmembrane protein TauE like.	0.424
BVC80_1039g12	BVC80_9085g10	A0A200QVN9	A0A200PQX4	Zinc finger protein.	RING-type E3 ubiquitin transferase.	0.459
BVC80_1289g20	BVC80_1039g12	A0A200Q9H7	A0A200QVN9	Ubiquitin-conjugating enzyme.	Zinc finger protein.	0.515
BVC80_1343g7	BVC80_1039g12	A0A200QKL7	A0A200QVN9	CS domain.	Zinc finger protein.	0.882
BVC80_1433g20	BVC80_1039g12	A0A200QBW3	A0A200QVN9	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	Zinc finger protein.	0.620
BVC80_1749g22	BVC80_1039g12	A0A200QL80	A0A200QVN9	Caleosin.	Zinc finger protein.	0.515
BVC80_1821g92	BVC80_1039g12	A0A200QZN3	A0A200QVN9	WD40 repeat.	Zinc finger protein.	0.502
BVC80_479g36	BVC80_1039g12	A0A200Q7P5	A0A200QVN9	Ubiquitin-conjugating enzyme.	Zinc finger protein.	0.515
BVC80_491g2	BVC80_1039g12	A0A200Q8T6	A0A200QVN9	WD40 repeat.	Zinc finger protein.	0.502
BVC80_9069g81	BVC80_1039g12	A0A200PP30	A0A200QVN9	Transmembrane protein TauE like.	Zinc finger protein.	0.424
BVC80_9069g81	BVC80_9085g10	A0A200PP30	A0A200PQX4	Transmembrane protein TauE like.	RING-type E3 ubiquitin transferase.	0.418
BVC80_9069g86	BVC80_1039g12	A0A200PP17	A0A200QVN9	Transmembrane protein TauE like.	Zinc finger protein.	0.424