STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_1813g35SWAP/Surp. (1717 aa)    
Predicted Functional Partners:
BVC80_479g35
RNA recognition motif domain.
 
 
 0.679
BVC80_1723g16
RNA polymerase.
   
 
 0.677
BVC80_1787g170
Helicase; Belongs to the DEAD box helicase family.
  
 
 0.675
BVC80_1707g146
Small nuclear ribonucleoprotein G.
    
  0.672
BVC80_1183g31
Nuclear cap-binding protein subunit 2.
   
  0.664
BVC80_8745g6
Small nuclear ribonucleoprotein E.
   
 0.659
BVC80_857g49
50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
  
 
 0.636
BVC80_243g55
Small nuclear ribonucleoprotein-associated protein.
    
  0.626
BVC80_9029g42
MIF4G-like.
    
  0.625
BVC80_8825g22
Ribonucleoprotein LSM domain.
    
  0.624
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.