STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_1813g19Pentatricopeptide repeat. (503 aa)    
Predicted Functional Partners:
BVC80_887g55
Pentatricopeptide repeat.
  
   0.917
BVC80_9099g100
Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
   
   0.846
BVC80_59g62
Pentatricopeptide repeat.
   
  
0.745
BVC80_8951g26
Ribosomal protein L21.
   
   0.741
BVC80_237g65
Uncharacterized protein.
   
   0.734
BVC80_209g308
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
   0.732
BVC80_8911g21
Crotonase superfamily; Belongs to the enoyl-CoA hydratase/isomerase family.
   
   0.732
BVC80_9017g37
Ribosomal protein S23/S29.
   
   0.732
BVC80_277g36
Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
   0.730
BVC80_8967g35
Ribosomal protein S16.
   
   0.727
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.