STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_1819g12Late embryogenesis abundant protein. (189 aa)    
Predicted Functional Partners:
BVC80_8903g4
Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.
   
 0.966
BVC80_1321g23
Non-structural maintenance of chromosomes element 1.
    
 0.965
BVC80_8653g5
RecF/RecN/SMC.
   
 0.950
BVC80_9081g2
RecF/RecN/SMC.
   
 0.949
BVC80_8687g7
E3 SUMO-protein ligase Nse2 (Mms21).
    
 0.948
BVC80_9089g119
Structural maintenance of chromosomes protein.
    
 0.705
BVC80_9089g118
Structural maintenance of chromosomes protein.
    
 0.705
BVC80_9099g200
Structural maintenance of chromosomes protein.
   
 0.700
BVC80_1835g68
DUF641 domain-containing protein.
   
 0.700
BVC80_8923g10
Structural maintenance of chromosomes protein.
    
 0.679
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.