STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_8957g19C-5 cytosine methyltransferase. (434 aa)    
Predicted Functional Partners:
BVC80_1787g198
Stress responsive alpha-beta barrel.
    
 0.646
BVC80_1519g17
Protein-tyrosine phosphatase.
    
 0.573
BVC80_1809g3
Leucine-rich repeat.
    
 0.560
BVC80_9051g28
Ureohydrolase; Belongs to the arginase family.
    
 
 0.544
BVC80_8873g14
COBRA.
    
  0.543
BVC80_9035g53
Protein RDM1.
    
 
 0.500
BVC80_1833g162
Cytosine-specific methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
    
 0.496
BVC80_8843g2
DNA repair protein Rad50.
    
  0.490
BVC80_1653g59
Clathrin adaptor; Belongs to the adaptor complexes medium subunit family.
    
  0.455
BVC80_479g21
Rhodanese-like domain.
    
  0.455
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.