Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BVC80_1395g90 | BVC80_1835g452 | A0A200Q1P2 | A0A200R5S9 | SNF2-related. | JmjC domain. | 0.968 |
BVC80_1395g90 | BVC80_1835g664 | A0A200Q1P2 | A0A200QX09 | SNF2-related. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.924 |
BVC80_1395g90 | BVC80_8539g8 | A0A200Q1P2 | A0A200PLV0 | SNF2-related. | Actin-related protein; Belongs to the actin family. | 0.965 |
BVC80_1395g90 | BVC80_8963g38 | A0A200Q1P2 | A0A200PV44 | SNF2-related. | DNA-directed RNA polymerase. | 0.628 |
BVC80_1395g90 | BVC80_969g18 | A0A200Q1P2 | A0A200QMB7 | SNF2-related. | SWIB/MDM2 domain. | 0.965 |
BVC80_1591g59 | BVC80_1835g452 | A0A200QI95 | A0A200R5S9 | RuvB-like helicase; Belongs to the RuvB family. | JmjC domain. | 0.817 |
BVC80_1591g59 | BVC80_1835g664 | A0A200QI95 | A0A200QX09 | RuvB-like helicase; Belongs to the RuvB family. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.854 |
BVC80_1591g59 | BVC80_8539g8 | A0A200QI95 | A0A200PLV0 | RuvB-like helicase; Belongs to the RuvB family. | Actin-related protein; Belongs to the actin family. | 0.997 |
BVC80_1591g59 | BVC80_8963g38 | A0A200QI95 | A0A200PV44 | RuvB-like helicase; Belongs to the RuvB family. | DNA-directed RNA polymerase. | 0.616 |
BVC80_1723g16 | BVC80_1835g452 | A0A200QCF2 | A0A200R5S9 | RNA polymerase. | JmjC domain. | 0.563 |
BVC80_1723g16 | BVC80_1835g664 | A0A200QCF2 | A0A200QX09 | RNA polymerase. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.852 |
BVC80_1723g16 | BVC80_8963g38 | A0A200QCF2 | A0A200PV44 | RNA polymerase. | DNA-directed RNA polymerase. | 0.999 |
BVC80_1835g452 | BVC80_1395g90 | A0A200R5S9 | A0A200Q1P2 | JmjC domain. | SNF2-related. | 0.968 |
BVC80_1835g452 | BVC80_1591g59 | A0A200R5S9 | A0A200QI95 | JmjC domain. | RuvB-like helicase; Belongs to the RuvB family. | 0.817 |
BVC80_1835g452 | BVC80_1723g16 | A0A200R5S9 | A0A200QCF2 | JmjC domain. | RNA polymerase. | 0.563 |
BVC80_1835g452 | BVC80_1835g664 | A0A200R5S9 | A0A200QX09 | JmjC domain. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.853 |
BVC80_1835g452 | BVC80_695g36 | A0A200R5S9 | A0A200Q0L9 | JmjC domain. | B30.2/SPRY domain. | 0.930 |
BVC80_1835g452 | BVC80_8539g8 | A0A200R5S9 | A0A200PLV0 | JmjC domain. | Actin-related protein; Belongs to the actin family. | 0.574 |
BVC80_1835g452 | BVC80_8963g38 | A0A200R5S9 | A0A200PV44 | JmjC domain. | DNA-directed RNA polymerase. | 0.844 |
BVC80_1835g452 | BVC80_969g18 | A0A200R5S9 | A0A200QMB7 | JmjC domain. | SWIB/MDM2 domain. | 0.851 |
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