BVC80_949g6 protein (Macleaya cordata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BVC80_949g6

Uncharacterized protein. (198 aa)

Predicted Functional Partners:

BVC80_5365g1

0.998

BVC80_1609g35

0.996

BVC80_9015g36

0.990

BVC80_1835g100

0.990

BVC80_1723g16

0.987

BVC80_8963g38

0.986

BVC80_9053g11

0.986

BVC80_8827g15

0.985

BVC80_8569g1

0.985

BVC80_1483g9

0.985

Your Current Organism:

Macleaya cordata

NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BVC80_1483g9	BVC80_1609g35	A0A200QNI5	A0A200Q9V0	RNA polymerase I associated factor.	DNA-directed RNA polymerase.	0.995
BVC80_1483g9	BVC80_1723g16	A0A200QNI5	A0A200QCF2	RNA polymerase I associated factor.	RNA polymerase.	0.989
BVC80_1483g9	BVC80_1835g100	A0A200QNI5	A0A200R4R9	RNA polymerase I associated factor.	RNA_pol_L_2 domain-containing protein.	0.987
BVC80_1483g9	BVC80_5365g1	A0A200QNI5	A0A200Q304	RNA polymerase I associated factor.	DNA-directed RNA polymerase.	0.998
BVC80_1483g9	BVC80_8827g15	A0A200QNI5	A0A200PSD6	RNA polymerase I associated factor.	RNA polymerase I specific transcription initiation factor RRN3.	0.988
BVC80_1483g9	BVC80_8963g38	A0A200QNI5	A0A200PV44	RNA polymerase I associated factor.	DNA-directed RNA polymerase.	0.980
BVC80_1483g9	BVC80_9015g36	A0A200QNI5	A0A200QQ99	RNA polymerase I associated factor.	Uncharacterized protein.	0.998
BVC80_1483g9	BVC80_9053g11	A0A200QNI5	A0A200RA48	RNA polymerase I associated factor.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.994
BVC80_1483g9	BVC80_949g6	A0A200QNI5	A0A200QX44	RNA polymerase I associated factor.	Uncharacterized protein.	0.985
BVC80_1609g35	BVC80_1483g9	A0A200Q9V0	A0A200QNI5	DNA-directed RNA polymerase.	RNA polymerase I associated factor.	0.995
BVC80_1609g35	BVC80_1723g16	A0A200Q9V0	A0A200QCF2	DNA-directed RNA polymerase.	RNA polymerase.	0.999
BVC80_1609g35	BVC80_1835g100	A0A200Q9V0	A0A200R4R9	DNA-directed RNA polymerase.	RNA_pol_L_2 domain-containing protein.	0.999
BVC80_1609g35	BVC80_5365g1	A0A200Q9V0	A0A200Q304	DNA-directed RNA polymerase.	DNA-directed RNA polymerase.	0.999
BVC80_1609g35	BVC80_8569g1	A0A200Q9V0	A0A200QIQ1	DNA-directed RNA polymerase.	RNA polymerase I associated factor.	0.995
BVC80_1609g35	BVC80_8827g15	A0A200Q9V0	A0A200PSD6	DNA-directed RNA polymerase.	RNA polymerase I specific transcription initiation factor RRN3.	0.997
BVC80_1609g35	BVC80_8963g38	A0A200Q9V0	A0A200PV44	DNA-directed RNA polymerase.	DNA-directed RNA polymerase.	0.808
BVC80_1609g35	BVC80_9015g36	A0A200Q9V0	A0A200QQ99	DNA-directed RNA polymerase.	Uncharacterized protein.	0.999
BVC80_1609g35	BVC80_9053g11	A0A200Q9V0	A0A200RA48	DNA-directed RNA polymerase.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.998
BVC80_1609g35	BVC80_949g6	A0A200Q9V0	A0A200QX44	DNA-directed RNA polymerase.	Uncharacterized protein.	0.996
BVC80_1723g16	BVC80_1483g9	A0A200QCF2	A0A200QNI5	RNA polymerase.	RNA polymerase I associated factor.	0.989