STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_1823g72Uncharacterized protein. (580 aa)    
Predicted Functional Partners:
BVC80_1737g9
tRNA transferase Trm5/Tyw2.
   
  
 0.657
BVC80_441g171
Pseudouridine synthase.
   
  
 0.549
BVC80_9099g182
H/ACA ribonucleoprotein complex.
     
 0.546
BVC80_339g36
Pseudouridine synthase I.
   
  
 0.505
BVC80_1117g10
Flavodoxin.
      
 0.485
BVC80_1745g4
tRNA (guanine(26)-N(2))-dimethyltransferase.
      
 0.480
BVC80_1837g63
tRNA (Guanine(26)-N(2))-dimethyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
      
 0.480
BVC80_1823g60
Pseudouridine synthase I.
   
  
 0.471
BVC80_1837g40
Pseudouridine synthase I.
   
  
 0.471
BVC80_8885g2
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
      
 0.463
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.