STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_8971g13Splicing factor SF3a60 binding domain. (307 aa)    
Predicted Functional Partners:
BVC80_1835g357
Zinc finger protein.
    
 0.988
BVC80_1769g83
Splicing factor 3B subunit 1.
   
 0.980
BVC80_9087g38
PSP.
   
 0.977
BVC80_9093g61
PHF5-like.
   
 0.977
BVC80_1715g50
RNA recognition motif domain.
    
 0.972
BVC80_9099g178
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.970
BVC80_1707g146
Small nuclear ribonucleoprotein G.
   
 0.966
BVC80_8745g6
Small nuclear ribonucleoprotein E.
   
 0.965
BVC80_8999g33
RNA recognition motif domain.
   
 0.957
BVC80_243g55
Small nuclear ribonucleoprotein-associated protein.
   
 0.957
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.