STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_1543g148WW domain. (1126 aa)    
Predicted Functional Partners:
BVC80_1065g181
Helicase; Belongs to the DEAD box helicase family.
  
  
 
0.765
BVC80_209g175
Helicase; Belongs to the DEAD box helicase family.
  
  
 
0.760
BVC80_521g94
Helicase.
   
 0.758
BVC80_949g62
Nop domain.
  
 
 0.755
BVC80_1827g57
Eukaryotic rRNA processing.
   
 0.753
BVC80_819g2
Pescadillo.
   
 0.751
BVC80_819g3
Pescadillo.
   
 0.751
BVC80_1193g2
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.751
BVC80_9079g101
Sde2 N-terminal domain.
   
 0.732
BVC80_1519g19
GTP binding domain.
   
 0.724
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.