STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_1837g120Uncharacterized protein. (467 aa)    
Predicted Functional Partners:
BVC80_9087g45
Ribosomal protein L24e-related.
   
 
 0.987
BVC80_757g44
Brix domain.
   
 
 0.981
BVC80_7725g7
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 
 0.977
BVC80_8573g3
RNA recognition motif domain.
   
 
 0.973
BVC80_9083g88
WD40 repeat.
   
 
 0.972
BVC80_8991g36
CCAAT-binding factor.
   
 
 0.970
BVC80_8947g21
60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.
  
 
 0.967
BVC80_1827g57
Eukaryotic rRNA processing.
   
 
 0.965
BVC80_1831g271
Pumilio RNA-binding repeat.
   
 
 0.960
BVC80_1551g30
WD40 repeat.
   
 
 0.955
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.