BVC80_9055g12 protein (Macleaya cordata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BVC80_9055g12

Uncharacterized protein. (1053 aa)

Predicted Functional Partners:

BVC80_9097g240

0.659

BVC80_9099g147

0.490

BVC80_905g12

0.448

BVC80_2593g1

0.447

BVC80_989g36

0.443

BVC80_1519g18

0.423

BVC80_9061g15

0.419

BVC80_9075g40

0.412

BVC80_9085g135

0.409

BVC80_1551g29

0.407

Your Current Organism:

Macleaya cordata

NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BVC80_1519g18	BVC80_1551g29	A0A200PTF9	A0A200QY65	Uncharacterized protein.	Uncharacterized protein.	0.484
BVC80_1519g18	BVC80_2593g1	A0A200PTF9	A0A200QWH6	Uncharacterized protein.	TRAPP II complex.	0.442
BVC80_1519g18	BVC80_9055g12	A0A200PTF9	A0A200R9K4	Uncharacterized protein.	Uncharacterized protein.	0.423
BVC80_1519g18	BVC80_9061g15	A0A200PTF9	A0A200PN13	Uncharacterized protein.	Uncharacterized protein.	0.496
BVC80_1519g18	BVC80_9075g40	A0A200PTF9	A0A200PUA7	Uncharacterized protein.	Rho GTPase-activating protein domain.	0.422
BVC80_1551g29	BVC80_1519g18	A0A200QY65	A0A200PTF9	Uncharacterized protein.	Uncharacterized protein.	0.484
BVC80_1551g29	BVC80_2593g1	A0A200QY65	A0A200QWH6	Uncharacterized protein.	TRAPP II complex.	0.534
BVC80_1551g29	BVC80_9055g12	A0A200QY65	A0A200R9K4	Uncharacterized protein.	Uncharacterized protein.	0.407
BVC80_1551g29	BVC80_905g12	A0A200QY65	A0A200QEM4	Uncharacterized protein.	Uncharacterized protein.	0.405
BVC80_1551g29	BVC80_9061g15	A0A200QY65	A0A200PN13	Uncharacterized protein.	Uncharacterized protein.	0.536
BVC80_1551g29	BVC80_9075g40	A0A200QY65	A0A200PUA7	Uncharacterized protein.	Rho GTPase-activating protein domain.	0.464
BVC80_2593g1	BVC80_1519g18	A0A200QWH6	A0A200PTF9	TRAPP II complex.	Uncharacterized protein.	0.442
BVC80_2593g1	BVC80_1551g29	A0A200QWH6	A0A200QY65	TRAPP II complex.	Uncharacterized protein.	0.534
BVC80_2593g1	BVC80_9055g12	A0A200QWH6	A0A200R9K4	TRAPP II complex.	Uncharacterized protein.	0.447
BVC80_2593g1	BVC80_9061g15	A0A200QWH6	A0A200PN13	TRAPP II complex.	Uncharacterized protein.	0.528
BVC80_2593g1	BVC80_9075g40	A0A200QWH6	A0A200PUA7	TRAPP II complex.	Rho GTPase-activating protein domain.	0.434
BVC80_9055g12	BVC80_1519g18	A0A200R9K4	A0A200PTF9	Uncharacterized protein.	Uncharacterized protein.	0.423
BVC80_9055g12	BVC80_1551g29	A0A200R9K4	A0A200QY65	Uncharacterized protein.	Uncharacterized protein.	0.407
BVC80_9055g12	BVC80_2593g1	A0A200R9K4	A0A200QWH6	Uncharacterized protein.	TRAPP II complex.	0.447
BVC80_9055g12	BVC80_905g12	A0A200R9K4	A0A200QEM4	Uncharacterized protein.	Uncharacterized protein.	0.448