STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_157g118Uncharacterized protein. (238 aa)    
Predicted Functional Partners:
BVC80_8971g11
RNA-binding.
  
   
 0.684
BVC80_9067g79
Pentatricopeptide repeat.
  
   
 0.630
BVC80_379g67
RNA-binding.
  
   
 0.594
BVC80_1715g63
Transcription factor GRAS; Belongs to the GRAS family.
  
     0.509
BVC80_1833g37
RNA-binding.
  
   
 0.491
BVC80_1229g2
Plant organelle RNA recognition domain.
  
     0.464
BVC80_7167g1
Ribonuclease III domain.
      
 0.463
BVC80_1289g18
Pentatricopeptide repeat.
      
 0.463
BVC80_1829g58
Pentatricopeptide repeat.
      
 0.461
BVC80_521g7
Uncharacterized protein.
  
     0.460
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.